MEA preparation:

Please see:
Potter, S. M., & DeMarse, T. B. (2001). A new approach to neural cell culture for long-term studies. J Neurosci Methods, 110(1-2), 17-24. [PubMed]

Make sure MEAs are clean and sterile (we use alcohol and DI water/soaking, for cleaning). Sterilize either with UV light or autoclave. Some like to store their MEAs in sterile buffered DI water to maintain hydrophyllic surface.

Place sterile MEAs inside a polysterene Petri dish.

PEI (hydrophyllic surface)

Apply 200 ul of 0.1% PEI solution over the center of the array. Let stand for 30 minutes but do not allow the PEI to dry (add a moist bit of sterile gauze if needed to a Petri dish if needed).
This will create a nice hydrophyillic surface…result is a nice monolayer of cells without the cell clumping (after two weeks in vitro) that occurs with polylysine.

Rinse PEI out of MEA using a combination of aspiration followed by filling with sterile DI water. Repeat rinse four times and let dry.
It is very important that any residual PEI be removed as it is toxic to the cells (they will die within a day or two of plating).
Note: when you rinse you should notice that the DI water will tend to “stick” to the area you treated with PEI. This is one of the ways you know if the treatment has been successful.

Laminin (promote growth)

Apply a 10 or 20 ul droplet of laminin over the array. Let stand for 30 min.
Why 10 or 20 ul? The size of the droplet determines the area in which the cells will be placed (see following step). You should match the size of the laminin droplet with the size of the droplet of cell suspension you will add. This will confine the cells to the droplet area, you use less cells, and can adjust the density of cells over the electrodes as desired.

Cell plating

Create a cell suspension of around 2500 cells/ul (see bioworthinton cell prep below).
We obtain our cells (rat cortices) online from Brain bits
We usually plate around 25K cells or 10 ul of suspension. You can do 50K if you like but if you go over 100K you may begin to experience problems with acidity in the media when the culture matures at 30 days.
Carefully add the 10 ul droplet of cell suspension to the laminin droplet on the surface of the MEA. Let it stand for 10 min and then check the density over the electrodes to ensure you have the desirec coverage.
If you don’t have enough coverage…add more cells at this time.
As the cells drop toward the surface you should see them “stick” to the surface on contact. If they appear to bounce around your surface treatment is not good.
Slowly flood the MEA chamber with 1 ml DMEM media (w/10% horse serum). Put the FEP membrane lid on and put it in the incubator…

Next Day:

Check the cultures on the following day. You can then compare the density of the culture during plating with the density on the following day to gauge survivability. It is possible to add cells from the prior day at this time but this often has only marginal success.
You should see axonal sprouting. This will indicate the overall health of your cultures.
Look for action potentials on day 3 to 5….bursting on days 7 to 10…


DMEM (Delbecco's Modified Eagle's Medium) with 10% Horse Serum

cc-4195 PEI from clonetics mixed with cc-4196 PBS
Below is the procedure for preparing 1X PEI Plating Substrate using Clonetics™ 5%
PEI stock solution and Borate Buffer Solution.

1. Prepare PEI Plating Substrate to a final concentration of 0.05% (1X): Make a
1:100 dilution of the 5% PEI Plating Substrate stock solution using Borate
buffer, and filter through a 0.2 micron filter. Store under sterile conditions at
4_C for up to 1 month.

Cell Dissociation
We obtain E-18 Rat Cortices from Brain Bits (
We use the
Bioworthington Papain dissociation kit for the dissociation.

Bioworthington instructions:

(available on their website)

Dnase Vial, PDS
Earle's Balanced Salt Solution, PDS
Ovomucoid Inhibitor Vial, PDS
Papain Vial, PDS


Proteolytic enzymes are widely used in cell dissociation. With some tissues papain has proved less damaging and more effective than other proteases. Lam found that of the enzymes used for dissociating turtle retina, papain produced the least trauma. Intact single photoreceptor cells have been isolated from adult salamander retina with papain. Huettner and Baughman described a method using papain to obtain high yields of viable, morphologically intact cortical neurons from postnatal rats. Finkbeiner and Stevens applied the Huettner and Baughman method to the dissociation of postnatal rat hippocampus. Papain is used with fetal as well as postnatal brain regions to provide maximal dissociation and viability of neurons.

The Worthington Papain Dissociation System is a set of reagents intended for use in the tissue dissociation method of Huettner and Baughman. The materials are designed for convenience and simplicity and are useful to the occasional user as well as the more experienced and frequent user. Each lot is use tested for performance in tissue dissociation and provides freshly prepared enzyme solutions for each dissociation.

The reagents are stable at ambient temperatures for the periods of time expected in normal shipping procedures, but the package should be refrigerated upon arrival and can be stored at 4-8°C for up to four months before use.

Description and Package Contents:

The package contains sufficient materials for dissociation of five separate tissue aliquots of up to 0.3 - 0.4 cm3 each. For larger tissue samples prepare proportionately larger volumes of reagents at each step and combine them in the same ratio as described in the protocol.
Vial 1
Sterile Earle's Balanced Salt Solution (EBSS) with bicarbonate and phenol red, one vial per package.
Aliquots of this vial are used to reconstitute other vials and to prepare dilute inhibitor solution. Refrigerate between uses and equilibrate with sterile O
2:CO 2before each use.

Vial 2
Papain containing L-cysteine and EDTA, five single use vials per package.
This material is 0.22 micron membrane filtered and lyophilized in autoclaved vials. A vial reconstituted with five mls of EBSS (vial 1) yields a solution at 20 units of papain per ml in one millimolar L-cysteine with 0.5 millimolar EDTA. Brief incubation is needed to insure full solubility and activity.

Vial 3
Deoxyribonuclease I (DNase), five single use vials per package.
This material is 0.22 micron membrane filtered and lyophilized in autoclaved vials. A vial reconstituted with 0.5 ml of EBSS (vial 1) yields a solution at 2000 units of deoxyribonuclease per ml. Avoid vigorous mixing.
Vial 4
Ovomucoid protease inhibitor with bovine serum albumin, one vial per package.
This material is 0.22 micron membrane filtered and lyophilized in autoclaved vials. A vial reconstituted with 32 mls of EBSS (vial 1) yields a solution at an effective concentration of 10 mgs of ovomucoid inhibitor and 10 mgs of albumin per ml. The inner rubber stopper can be discarded after reconstitution. Aliquots of this vial are used for each dissociation. Refrigerate between uses and equilibrate with sterile O
2:CO 2before each use. Stable after reconstitution when stored at 4°C.
Also included is a card correlating color with pH for use as a guide in O
2:CO 2equilibration.
Needed but not supplied:
Sterile pipets
Sterile centrifuge tubes
Centrifuge to operate at 70g and 300g
Device for sterile 95% O
2:5%CO 2equilibration of solutions
Water bath at 37°C
Device for incubation at 37°C with agitation.


Briefly the procedure is as follows: Components of the dissociation medium are reconstituted as described previously; minced tissue is added and the mixture is equilibrated with O 2:CO 2. Tissue is dissociated by incubation with activated papain at 37°C, followed by trituration. Dissociated cells are pelleted then resuspended in medium containing ovomucoid, a papain inhibitor. Intact cells are separated from cell membranes by centrifugation through a single step discontinuous density gradient and the pellet finally resuspended in medium appropriate for cell culture or flow cytometric analysis.

For those unfamiliar with tissue dissociation and cell culture techniques, two operations deserve additional explanation.

1. Equilibration with 95% O 2:5%CO 2

It is important for the survival of the tissue during dissociation that the incubation medium be both well oxygenated and buffered at physiological pH. Both requirements are satisfied when the medium is equilibrated with 95% O 2:5%CO 2. The Earle's Balanced Salt Solution contains a pH sensitive indicator dye. When it is red or purple in color, the medium is too alkaline. This is likely to be the case when the tissue is placed in the papain solution (step #4), and reequilibration with O 2:CO 2is usually necessary prior to incubation at 37°C.

Gas should not be bubbled directly into any solution containing protein. This can result in frothing and denaturation of the protein with loss of biological activity. Gas can be sterilized by passage through a 0.45 micron membrane filter or through a sterile fiber plug such as the cotton plug in a sterile Pasteur or volumetric pipette. While mixing the solution, pass O
2:CO 2continuously through space above liquid until color indicates pH 7.2-7.4 according to color chart included in this system. The Earle's Balanced Salt Solution is pregassed but should be equilibrated with sterile O 2:CO 2each time the bottle is opened. The reconstituted inhibitor should also be equilibrated with sterile O 2:CO 2before each use.

2. Trituration (cell dispersion through mild pumping action):

This is a crucial procedure. It serves to break up the tissue fragments following incubation in the dissociation mix. If done too vigorously, cells will be destroyed; too weakly and tissue fragments will be left intact. In the context of neuronal tissue, gentle trituration, using a 10ml pipette, constitutes filling and emptying the barrel at a rate of about 5.0 ml per sec. Avoid bubbling the cell suspension.

Dissociation Protocol:

1. (Sterile procedures should be used throughout)
Add 32 mls of EBSS (vial 1) to the albumin ovomucoid inhibitor mixture (vial 4) and allow the contents to dissolve while preparing the other components. Mix before using and equilibrate with O
2:CO 2. Reconstitute for the first use, then store and reuse.

2. Add 5 mls of EBSS (vial 1) to a papain vial (vial 2). Place vial 2 in a 37°C water bath for ten minutes or until the papain is completely dissolved and the solution appears clear. If solution appears alkaline (red or purple) equilibrate the solution with 95% O
2:5%CO 2. The solution should be used promptly but can be held at room temperature during the dissection. A separate papain vial is provided for each dissociation. (If desired the papain can be transferred to a centrifuge tube or other container before proceeding.)

3. Add 500 µls of EBSS to a DNase vial (vial 3). Mix gently -- DNase is sensitive to shear denaturation. Add 250 µls of this solution to the vial containing the papain. This preparation contains a final concentration of approximately 20 units/ml papain and 0.005% DNase. Save the balance of the DNase vial to use in step #7. A separate DNase vial is provided for each dissociation..

4. Place tissue in the papain solution. Tissue should be slightly minced or cut into small pieces (this can be done separately or on the side of the tube containing the papain). Displace air in vial with sterile O
2:CO 2. Do not bubble gas through the solution. Immediately cap vial.

5. Incubate the vial containing the tissue at 37°C with constant agitation (a rocker platform is ideal) for 30 min to 1 1/2 hrs. The amount of time must be determined empirically; however, embryonic tissue generally requires less time than postnatal tissue.

6. Triturate the mixture with 10 ml pipette. Allow any pieces of undissociated tissue remaining after trituration to settle to the bottom of the tube. Vigorous trituation of neuronal tissue results in a high yield of cells, most of which are spherical and devoid of processes. Gentle trituration results in more undissociated tissue fragments and a lower yield of cells although many of these now retain their proximal processes.

7. Carefully remove the cloudy cell suspension, place in sterile screwcapped tube and centrifuge at 300g for 5 minutes at room temperature. Be careful to avoid including any pieces of undissociated tissue during this time -- prepare medium to resuspend the pelleted cells.

Mix 2.7 mls EBSS (vial 1) with 300 µls reconstituted albumin-ovomucoid inhibitor solution (vial 4) in a sterile tube. Add 150 µls of DNase solution (vial 3) saved at step #3.

8. Discard supernatant and immediately resuspend cell pellet in DNase dilute albumin-inhibitor solution.

9. Prepare discontinuous density gradient. Add 5.0 ml of albumin-inhibitor solution (vial 4) to centrifuge tube, carefully layer cell suspension on top, then centrifuge at 70g for 6 minutes at room temperature. The interface between the two layers of the gradient should be clearly visible although minimal mixing at this boundary does not affect the result. Dissociated cells pellet at the bottom of the tube, membrane fragments remain at the interface.

10. Discard the supernatant and immediately resuspend the pelleted cells in medium for cell culture or for flow cytometric analysis.

Bader, C.R., MacLeish, P.R., and Schwartz, E.A.: Responses to Light of Solitary Rod Photoreceptors Isolated From Tiger Salamander Retina, Proc Natl Acad Sci U S A 75 , 3507, 1978
Bashor, Mark M: ,
Methods Enzymol LVIII (I) , 124, 1979
Dreyfus, Cheryl F., and Black, Ira B.: ,
Methods Neurosci 2 , 10, 1990
Finkbeiner, S., and Stevens, C.F.: Applications of Quantitative Measurements for Assessing Glutamate Neurotoxicity,
Proc Natl Acad Sci U S A 85 , 4071, 1988
Huettner, J.E. and Baughman, R.W.: Primary Culture of Identified Neurons From the Visual Cortex of Postnatal Rats,
J Neurosci 6 , 3044, 1986
Lam, D.M.K.: Biosynthesis of Acetylcholine in Turtle Photoreceptors,
Proc Natl Acad Sci U S A 69 , 1987, 1972
Townes-Anderson, E., MacLeish, P., and Raviola, E.: Rod Cells Dissociated from Mature Salamander Retina: Ultrastruture and Uptake of Horseradish Peroxidase, J Cell Biol 100 , 175, 1985